chr7:100238469:G>A Detail (hg19) (TFR2)

Information

Genome

Assembly Position
hg19 chr7:100,238,469-100,238,469
hg38 chr7:100,640,846-100,640,846 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_003227.3:c.313C>T NP_003218.2:p.Arg105Ter
Ensemble ENST00000223051.8:c.313C>T ENST00000223051.8:p.Arg105Ter
ENST00000431692.5:c.313C>T ENST00000431692.5:p.Arg105Ter
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Pathogenic Likely pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 604720 OMIM
HGNC 11762 HGNC
Ensembl ENSG00000106327 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic Likely pathogenic 2023-08-13 criteria provided, multiple submitters, no conflicts hemochromatosis type 3 germline unknown Detail
Pathogenic 2021-10-14 criteria provided, single submitter Hereditary hemochromatosis germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.562 HEMOCHROMATOSIS, TYPE 3 NA CLINVAR Detail
0.125 Hereditary hemochromatosis Early onset hereditary hemochromatosis resulting from a novel TFR2 gene nonsense... BeFree 15147384 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_003227.4(TFR2):c.313C>T (p.Arg105Ter) AND Hemochromatosis type 3 ClinVar Detail
NM_003227.4(TFR2):c.313C>T (p.Arg105Ter) AND Hereditary hemochromatosis ClinVar Detail
NA DisGeNET Detail
Early onset hereditary hemochromatosis resulting from a novel TFR2 gene nonsense mutation (R105X) in... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs80338878 dbSNP
Genome
hg19
Position
chr7:100,238,469-100,238,469
Variant Type
snv
Reference Allele
G
Alternative Allele
A
Homozygous Counts in All Race (ExAC)
0
East Asian Chromosome Counts (ExAC)
8618
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
120578
Allele Counts in All Race (ExAC)
2
Heterozygous Counts in All Race (ExAC)
2
Allele Frequency in All Race (ExAC)
1.658677370664632E-5
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